BB838: Basic bioacoustics and signal analysis

The Study Board for Science

Teaching language: English
EKA: N110071102
Assessment: Second examiner: None
Grading: Pass/Fail
Offered in: Odense
Offered in: Spring
Level: Master's level course approved as PhD course

STADS ID (UVA): N110071101
ECTS value: 5

Date of Approval: 03-10-2024


Duration: 1 semester

Version: Approved - active

Entry requirements

None

Academic preconditions

None

Course introduction

This class introduces important mathematical and physical principles of bioacoustics. Programming exercises are used to give the students a basic understanding for the logic of the theoretical material as well as of how to solve computational problems themselves. The programming language used in the course is Matlab and thus example code snippets are given in Matlab. However, the introduced principles and signal analysis concepts are of general nature and can be implemented in most modern programming languages such as R, Python, etc. The course consists of a series of introductory lectures followed by programming tutorials leading up to a final assignment where the students are asked to record and analyze an animal vocalization. Students are free to choose any animal to record for their final assignment but are explicitly invited to record study animals of the Sound Communication and Behaviour Group which are birds, frogs, bats and toothed whales. 

Expected learning outcome

The students obtain ‘hands-on’ experience with theoretical work in bioacoustics as well as using computer programming for problem solving and to conceptualize physical principles.

Content

Programming (Matlab):
●Introductory programming
●Writing scripts and functions
●Importing and analyzing acoustic data
●Programming Matlab with GUIs

Mathematics:
●Basic linear and logarithmic machinery
●Fourier analysis
●Filters

Physics (acoustics):
●Near and far fields
●Calibrated sound level measurements
●Transmission loss
●Refraction
●Reflections
●Transmission from one media to another

Literature

Course compendium and relevant bioacoustic papers provided via ITSlearning.

Examination regulations

Exam element a)

Timing

Spring

Tests

Final Assignment – Programming tasks

EKA

N110071102

Assessment

Second examiner: None

Grading

Pass/Fail

Identification

Full name and SDU username

Language

Normally, the same as teaching language

Examination aids

To be announced during the course

ECTS value

5

Indicative number of lessons

40 hours per semester

Teaching Method

At the faculty of science, teaching is organized after the three-phase model ie. intro, training and study phase.
●Intro phase: 20 hours
●Skills training phase: 20 hours, hereof exercises classes: 20 hours

Activities for the study phase: solve programming tasks with Matlab by utilizing provided code snippets and tips in the compendium and from the lecture slides.

Teacher responsible

Name E-mail Department
Magnus Wahlberg Magnus@biology.sdu.dk Lyd og Adfærd

Additional teachers

Name E-mail Department City
Felix Theo Häfele fth@biology.sdu.dk Biologisk Institut
Lasse Jakobsen lasse@biology.sdu.dk Biologisk Institut

Timetable

Administrative Unit

Biologisk Institut

Team at Registration

NAT

Offered in

Odense

Recommended course of study

Profile Education Semester Offer period

Transition rules

Transitional arrangements describe how a course replaces another course when changes are made to the course of study. 
If a transitional arrangement has been made for a course, it will be stated in the list. 
See transitional arrangements for all courses at the Faculty of Science.